123 Genomics - DNA, protein, genome and other sequence databases
spacer
a Genomics, Proteomics and Bioinformatics Knowledge Base
 Home | Search | About this site | DisclaimerContact us
Companies & Businesses  |  Courses & College Degrees  |  Diseases & Disorders  |  Genes & Proteins  |  Jobs & Careers  |  Journals & Publications  |  Learning  |  Meetings & Conferences  |  Methods & Protocols  |  Microarrays & DNA Chips  |  Molecular Pathways  |  News & Views  |  Organizations & Associations  |  Other Resources  |  Proteomics & Mass Spec  |  Sequence Analysis  |  Sequence Databases  |  SNPs, Mutations & Population Genetics  |  Softwares & Programming  |  Ventures, Investors & Industry

Sequence, Structure & Function Databases
Nucleic Acid Databases |Protein Databases |Carbohydrate Databases |Model Organisms Databases

DNA & RNA Databases
Major Sequence Repositories - Human Chromosome Information - Organelle Genome Databases - RNA Databases - Comparative & Phylogenetic Databases - SNPs,
 Mutations and Variations Databases - Alternative Splicing Databases - Specialized Databases 

Major Sequence Repositories:
DDBJ: DNA databank of Japan
EMBL: Maintained by EMBL
GenBank: Maintained by NCBI
 
Human Chromosome Information:
Click the link below to access chromosome information
1 2 3 4
5 6 7 8
9 10 11 12
13 14 15 16
17 18 19 20
21 22 X Y

Organelle Genome Databases:
OGMP:  Organell genome megasequencing program
GOBASE:  An organelle genome database
MitoMap:  Human mitochondrial genome database

RNA Databases:
Rfam: RNA familiy database
RNA base:   Database of RNA structures

tRNA database:   Database of  tRNAs
tRNA:  tRNA sequences and genes
sRNA:  Small RNA database

Comparative & Phylogenetic Databases:
COG:  Phylogenetic classification of proteins 
DHMHD:  Human-mouse homology database
HomoloGene:  Gene homologies across species
Homophila:  Human disease to Drosophila gene database
HOVERGEN:  Database of homologous vertebrate genes 
TreeBase:  A database of phylogenetic knowledge
XREF:  Cross-referencing with model organisms

SNPs, Mutations & Variations Databases:
ALPSbase: Database of mutations causing human ALPS
dbSNP:  Single nucleotide polymorphism database at NCBI
HGVbase:   Human Genome Variation database

Alternative Splicing Databases:
ASAP: Alternate splicing analysis tool at UCLA
ASG: Alternate splicing gallery
HASDB:  Human alternative splicing database at UCLA
AsMamDB:  alternatively spliced genes in human, mouse and rat
ASD: Alternative splicing database at CSHL
Specialised Databases:
ABIM:  Links to several genomics database
ACUTS:  Ancient conserved untranslated sequences
AGSD: Animal genome size database
AmiGO: The Gene Ontology database
ARGH: The acronym database
ASDB:  Database of alternatively spliced genes

BACPAC:  BAC and PAC genomic DNA library info
BBID: Biological Biochemical image database
Cardiac gene database:
CHLC:  Genetic markers on chromosomes
COGENT: Complete genome tracking database
COMPEL: Composite regulatory elements in eukaryotes 
CUTG:  Codon usage database 
dbEST:  Database of expressed sequences or mRNA
dbGSS: Genome survey sequence database
dbSTS: Sequence tagged sites (STS)
DBTSS: Database of transcriptional start sites
DOGS:  Database of genome sizes
EID:  The exon-intron database - Harvard
Exon-Intron: Exon-Intron database - Singapore
EPD:  Eukaryotic promotor database
FlyTrap: HTML based gene expression database
GDB:  The genome database
GenLink:  Resources for human genetic and telomere research 
GeneKnockouts:  Gene knockout information
GENOTK:  Human cDNA database
GEO:  Gene expression omnibus NCBI
GOLD:  Information on genome projects around the world
GSDB:The Genome Sequence DataBase
HGI:  TIGR human gene index
HTGS: High-through-put genomic sequence at NCBI
IMAGE:  The largest collection of DNA sequences clones
IMGT:   The international ImMunoGeneTics information system
IPCN:  Index to Plant Chromosome Numbers database
LocusLink:  Single query interface to sequence and genetic loci
TelDB:  The telomere database
MitoDat: Mitochondrial nuclear genes
Mouse EST:   NIA mouse cDNA project
MPSS: Searchable databases of several species
NDB:  Nucleic acid database
NEDO:  Human cDNA sequence database
NPD: Nuclear protein database
Oomycetes DB: Oomycetes database at Virginia Bioinformatics Institute
PLACE: Database of plant cis-acting regulatory DNA elements
RDP:  Ribosomal database project
RDB:  Receptor database at NIHS, Japan
Refseq: The NCBI reference sequence project
RHdb: Radiation hybrid physical map of chromosomes
SHIGAN: SHared Information of GENetic resources, Japan
SpliceDB:  Canonical and non-canonical splice site sequences
STACK:  Consensus human EST database
TAED:  The adaptive evolution database
TIGR:  Curated databases of microbes, plants and humans
TRANSFAC: The Transcription Factor Database
TRRD:  Transcription Regulatory region database
UniGene: Cluster of sequences for unique genes at NCBI
UniSTS:  Nonredundent collection of STS  

 
Protein Databases
Protein Sequence Databases - Protein Structure Databases - Protein Domains, Motifs and Signatures - Others
Protein Sequence Databases:
Antibodies: Sequence and Structure
BRENDA: Enzyme database
CD Antigens:  Database of CD antigens
dbCFC:  Cytokine family database
Histons:  Histone sequence database
HPRD:  Human protein reference database
InterPro: Intergrated documentation 5resources for protein families
iProClass: An integrated protein classification database
KIND:  A non-redundant protein sequence database
MHCPEP:  Database of MHC binding peptides
MIPS:  Munich information centre for protein sequences
PIR:  Annotated, and non-redundant protein sequence database
PIR-ALN: Curated database of protein sequence alignments
PIR-NREF: PIR nonredundent reference protein database
PMD:  Protein mutant database
PRF: Protein research foundation, Japan
ProClass: Non-redundant protein database
ProtoMap:  Hierarchical classification of swissprot proteins
REBASE:  Restriction enzyme database
RefSeq:   Reference sequence database at NCBI
SwissProt:  Curated protein sequence database
SPTR: Comprehensive protein sequence database
Transfac:  Transcription factor database
TrEMBL:  Annotated translations of EMBL nucleotide sequences
Tumor gene database:  Genes with cancer-causing mutations
WD repeats:  WD-repeat family of proteins
Protein Structure Databases:
Cath:  Protein structure classification
HIV Protease:   HIV protease database 3D structure
PDB:  3-D macromolecular structure data
PSI: Protein structure initiative
S2F: Structure to function project
Scop:  Structural Classification of Proteins
Protein Domains, Motifs & Signatures:
BLOCKS:  Multipe aligned segments of conserved protein regions
CCD:  Conserved domain database and search service
DOMO:  Homologous protein domain families
Pfam:  Database of protein domains and HMMs
ProDom:  Protein domain database
Prints:  Protein motif fingerprint database
Prosite:   Database of protein families and domains
SMART:  Simple modular architecture research tool
TIGRFAM: Protein families based on HMMs

Others:
Phospho Site:   Database of phosphorylation sites
PROW:  Protein reviews on the web
Protein Lounge: Complete systems biology
Other Databases
Carbohydarate Databases

Carb DB: Carbohydrate Sequence and Structure Database
GlycoWord: Glycoscience related information
SPECARB: Raman Spectra of carbohydrates

Other Databases
AlzGene: Alzheimers disease
Polygenic pathways : Alzheimer's disease, Bipolar disorder or Schizophrenia
 

Model Organism Databases and Resources

Arabidopsis - Bacteria - Sea Bass - Cat - Cattle - Chicken - Cotton - CyanoBacteria - Daphnia - Deer - Dictyostelium - Dog - Frog - Fruit Fly - Fungus - Goat - Horse - Madaka Fish - Maize - Malaria - Mosquito - Mouse - Pig - Plants - Protozoa - Puffer Fish - Rat - Rice - Rickettsia - Salmon - Sheep - Soy - Sorgham - Tetradon - Tilapia - Turkey - Viruses - Worm - Yeast - Zebra Fish

General Information
GMOD: Generic Model Organism Database
Model Organisms:  The WWW virtual library of model organisms

Arabidopsis thaliana
ABRC: Arabidopsis biological resource center
AGI: Arabidopsis genome initiative 
AREX: Arabidopsis gene expression database
Arabinet:  Arabidopsis information on the www
gipoco.com is neither affiliated with the authors of this page nor responsible for its contents. This is a safe-cache copy of the original web site.