modENCODE

The National Human Genome Research Institute MODel organism ENCyclopedia Of DNA Elements

The National Human Genome Research Institute (NHGRI) model organism ENCyclopedia Of DNA Elements (modENCODE) Project will try to identify all of the sequence-based functional elements in the Caenorhabditis elegans and Drosophila melanogaster genomes.

modMine

release 26

Older versions:

26, 25, 24, 23, 22, 21, 20, 19, 18, 17, 16

Cloud instance

amazon

The entire modENCODE data set available for analysis in the Amazon compute cloud.

Datasets

Dataset Search

Find, view and download datasets in bulk.

Get FTP data

FTP Download

Download publicly released data using the traditional FTP interface.

Choose an organism below to see GBrowse, Dataset Search links:

OICR GBrowse
  • C. elegans
  • D. melanogaster
  • D. ananassae
  • D. mojavensis
  • D. pseudoobscura
  • D. simulans
  • D. virilis
  • D. yakuba

Browse Projects

  • D. melanogaster
  • C. elegans
  • Histone Variants

    Genome-wide Chromatin Profiling

    Pi: Steven Henikoff
    Labs: Kamran Ahmad, Steven Henikoff
    Submissions: 32
    Experimental factors: developmental stage, biochemical fraction, cell line, extraction time, sodium chloride concentration
    GBrowse Tracks: 32
Filter by Pi:
  • Show all
  • Jason Lieb
  • Steven Henikoff
  • Chromatin Function

    Nucleosome mapping

    Pi: Jason Lieb
    Labs: Jason Lieb
    Submissions: 3
    Experimental factors: developmental stage, strain, temperature
    GBrowse Tracks: 3
  • Histone Variants

    Genome wide chromatin profiling in C. elegans

    Pi: Steven Henikoff
    Labs: Steven Henikoff
    Submissions: 8
    Experimental factors: developmental stage, biochemical fraction, extraction time, sodium chloride concentration, strain
    GBrowse Tracks: 8