- D. melanogaster
- C. elegans
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Histone Variants
Genome-wide Chromatin Profiling
Pi: Steven HenikoffLabs: Kamran Ahmad, Steven HenikoffSubmissions: 32Experimental factors: developmental stage, biochemical fraction, cell line, extraction time, sodium chloride concentrationGBrowse Tracks: 32
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- Jason Lieb
- Steven Henikoff
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Chromatin Function
Nucleosome mapping
Pi: Jason LiebLabs: Jason LiebSubmissions: 3Experimental factors: developmental stage, strain, temperatureGBrowse Tracks: 3 -
Histone Variants
Genome wide chromatin profiling in C. elegans
Pi: Steven HenikoffLabs: Steven HenikoffSubmissions: 8Experimental factors: developmental stage, biochemical fraction, extraction time, sodium chloride concentration, strainGBrowse Tracks: 8
- D. melanogaster
-
Origins of Replication
CGH drosophila cell lines
Pi: David MacAlpineLabs: David MacAlpineSubmissions: 1Experimental factors: cell lineGBrowse Tracks: 1 -
Origins of Replication
CNV in Drosophila cell lines
Pi: David MacAlpineLabs: David MacAlpineSubmissions: 4Experimental factors: cell lineGBrowse Tracks: 4 -
Origins of Replication
Differential Replication of Polytene Chromosomes
Pi: David MacAlpineLabs: Terry Orr-WeaverSubmissions: 4Experimental factors: developmental stage, strain, tissueFeatures: CopyNumberVariation: 149GBrowse Tracks: 4
- D. melanogaster
- C. elegans
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The Drosophila Transcriptome
RT-PCR
Pi: Sue CelnikerLabs: Michael BrentSubmissions: 5Experimental factors: developmental stageFeatures: CDNAMatch: 2352, MRNA: 1691, EST: 2352GBrowse Tracks: 8 -
The Drosophila Transcriptome
Analysis of TSS using stranded RACE products
Pi: Sue CelnikerLabs: Sue CelnikerSubmissions: 1Experimental factors: developmental stageGBrowse Tracks: 1 -
The Drosophila Transcriptome
5' RACE
Pi: Sue CelnikerLabs: Sue CelnikerSubmissions: 8Experimental factors: developmental stageFeatures: MRNA: 5604, EST: 1730720GBrowse Tracks: 5 -
The Drosophila Transcriptome
Validation of Drosophila transcripts by full-length cDNA screening and sequencing
Pi: Sue CelnikerLabs: Sue CelnikerSubmissions: 1Experimental factors: cDNA libraryFeatures: CDNAMatch: 17294GBrowse Tracks: 1 -
The Drosophila Transcriptome
Confirmation of Drosophila transcripts by full-length cDNA screening
Pi: Sue CelnikerLabs: Sue CelnikerSubmissions: 1Experimental factors: cDNA libraryFeatures: CDNAMatch: 1706 -
The Drosophila Transcriptome
Annotation of Drosophila splice junctions by RNA-seq
Pi: Sue CelnikerLabs: Brenton GraveleySubmissions: 30Experimental factors: developmental stageFeatures: ExonRegion: 3005431, Intron: 1745570, TranscriptRegion: 1745570GBrowse Tracks: 30 -
The Drosophila Transcriptome
Cap Analysis of Gene Expression
Pi: Sue CelnikerLabs: Sue CelnikerSubmissions: 1Experimental factors: developmental stageGBrowse Tracks: 2 -
The Drosophila Transcriptome
Drosophila Cell Line and Developmental Stage Gene and Exon Scores
Pi: Sue CelnikerLabs: Peter CherbasSubmissions: 1Experimental factors: developmental stage -
The Drosophila Transcriptome
Gene Model Prediction
Pi: Sue CelnikerLabs: Michael BrentSubmissions: 2Features: Gene: 14654, Exon: 368834, MRNA: 43846, OverlappingESTSet: 72572, ExonRegion: 97494, CDS: 219985, TranscriptionEndSite: 10836, FivePrimeUTR: 60186, StartCodon: 39549, ThreePrimeUTR: 40998, TSS: 22656, StopCodon: 39424, TranscriptRegion: 105560, EST: 354287GBrowse Tracks: 1
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- Fabio Piano
- Robert Waterston
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The 3' UTRome
Encyclopedia of C. elegans 3'UTRs and their regulatory elements
Pi: Fabio PianoLabs: Fabio Piano, John KimSubmissions: 41Experimental factors: developmental stage, strain, temperature, tissueFeatures: Exon: 21355, Gene: 20220, MRNA: 3720, PolyASignalSequence: 27135, Transcript: 27417, ThreePrimeRACEClone: 2700, PolyASite: 35382, CDS: 23792, EST: 2694, ThreePrimeRST: 2700, ThreePrimeUST: 2700, ThreePrimeUTR: 24055