'Orfs' web sites
Annotrack
annotrack.sanger.ac.uk 2014-11-09
orfs from Bazzini et al 519 Bazzini smORF Predicted sm orfs from Bazzini et al 312 Bazzini uORF Predicted upstream orfs from Bazzini et al 2109 Ensembl Imported models ENSEMBL 40319 HAVANA Manual annotation 7377 Lincer lncRNA predictions 112 Pandey novel genes Peptides providing evidence for novel genes Pandey lab, PMID 25060758 492 Pauli novel protein coding Novel protein coding loci from Pauli et al 605 bartel lncRNA lncRNA
annotrack.sanger.ac.uk 2014-11-09
orfs from Bazzini et al 519 Bazzini smORF Predicted sm orfs from Bazzini et al 312 Bazzini uORF Predicted upstream orfs from Bazzini et al 2109 Ensembl Imported models ENSEMBL 40319 HAVANA Manual annotation 7377 Lincer lncRNA predictions 112 Pandey novel genes Peptides providing evidence for novel genes Pandey lab, PMID 25060758 492 Pauli novel protein coding Novel protein coding loci from Pauli et al 605 bartel lncRNA lncRNA
Uniprot release 9.4
www.uniprot.org 2014-11-14 ⚑enterprise
orfs have been revised or retired. In collaboration with SGD we have revisited and updated all entries for which the protein sequence has been changed since the initial release in order to provide users with a set of yeast proteins that corresponds to the most current view of the yeast proteome. Ten years of post.genomic research have yielded a wealth of information on yeast proteins and we will continually revisit yeast entries
www.uniprot.org 2014-11-14 ⚑enterprise
orfs have been revised or retired. In collaboration with SGD we have revisited and updated all entries for which the protein sequence has been changed since the initial release in order to provide users with a set of yeast proteins that corresponds to the most current view of the yeast proteome. Ten years of post.genomic research have yielded a wealth of information on yeast proteins and we will continually revisit yeast entries
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Fungal protein annotation program
orfs thought to code for a protein, resulting in the complete S. cerevisiae proteome integration into UniProtKB Swiss.Prot in early 2007. Fission yeast Another yeast that was recognized early on as a valuable model organism for the study of conserved pathways and cell mechanisms is Schizosaccharomyces pombe, also commonly known as fission yeast. S. pombe shares many features with cells of more complicated eukaryotes and has long
Berkeley drosophila genome project
insitu.fruitfly.org 2011-11-04
orfs . For high priority genes not yet represented in any of these collections, we make templates using either PCR from genomic DNA or RT.PCR from an appropriate RNA source. Why do so many images show tracheal staining. Tracheal staining is a common insitu artifact, although optimization of our hybridization protocol has significantly reduced this problem in more recent experiments. It is easily distinguishable from real tracheal
insitu.fruitfly.org 2011-11-04
orfs . For high priority genes not yet represented in any of these collections, we make templates using either PCR from genomic DNA or RT.PCR from an appropriate RNA source. Why do so many images show tracheal staining. Tracheal staining is a common insitu artifact, although optimization of our hybridization protocol has significantly reduced this problem in more recent experiments. It is easily distinguishable from real tracheal
Encode project at ucsc
encodeproject.org 2013-02-07
orfs , antisense transcripts, or protein.coding regions that have been annotated as introns previously. Open Chromatin by FAIRE from ENCODE OpenChrom UNC Chapel Hill Release 2 FAIRE Formaldelhyde.Assisted Isolation of Regulatory Elements is a method to isolate and identify nucleosome.depleted regions of the genome. Release 2 of this track contains 12 new experiments, including 11 new cell lines. Transcription Factor Binding Sites
encodeproject.org 2013-02-07
orfs , antisense transcripts, or protein.coding regions that have been annotated as introns previously. Open Chromatin by FAIRE from ENCODE OpenChrom UNC Chapel Hill Release 2 FAIRE Formaldelhyde.Assisted Isolation of Regulatory Elements is a method to isolate and identify nucleosome.depleted regions of the genome. Release 2 of this track contains 12 new experiments, including 11 new cell lines. Transcription Factor Binding Sites
Candida genome database
www.candidagenome.org 2012-02-20 ⚑tech
orfs . Using software and database tools developed at the Saccharomyces Genome Database SGD , the Protein Information Pages display basic property, domain organization, structural and homology information. To view the page for a given protein, navigate to the Locus Summary page for the corresponding gene and click on the Protein tab towards the top of the page. Example Protein Pages Act1p; Cdc28p; Orf19.4531p. Posted February 5,
www.candidagenome.org 2012-02-20 ⚑tech
orfs . Using software and database tools developed at the Saccharomyces Genome Database SGD , the Protein Information Pages display basic property, domain organization, structural and homology information. To view the page for a given protein, navigate to the Locus Summary page for the corresponding gene and click on the Protein tab towards the top of the page. Example Protein Pages Act1p; Cdc28p; Orf19.4531p. Posted February 5,
Uniprot release 9.4
www.uniprot.org 2014-11-14 ⚑enterprise
orfs have been revised or retired. In collaboration with SGD we have revisited and updated all entries for which the protein sequence has been changed since the initial release in order to provide users with a set of yeast proteins that corresponds to the most current view of the yeast proteome. Ten years of post.genomic research have yielded a wealth of information on yeast proteins and we will continually revisit yeast entries
www.uniprot.org 2014-11-14 ⚑enterprise
orfs have been revised or retired. In collaboration with SGD we have revisited and updated all entries for which the protein sequence has been changed since the initial release in order to provide users with a set of yeast proteins that corresponds to the most current view of the yeast proteome. Ten years of post.genomic research have yielded a wealth of information on yeast proteins and we will continually revisit yeast entries
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