Search - iRefWeb - Wodak Lab

1. Search Terms

Protein/Gene IDs and Aliases

LEFT:
Enter your protein/gene IDs and aliases below, or you can paste in a whole list, to find interactions that match any of them. Autocomplete begins after 3 characters.

RIGHT (optional):
If you wish, constrain your search to find interactions between any protein/gene in the left box with any entered or pasted in the right box.

PubMed IDs

Full Text

Lists of genes or proteins aliases and PubMed IDs should be delimited by whitespace or new lines.

2. Search Filters

Display filter counts and search results by:

protein 0

interaction 509876

publication 0

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Click on any filter to expand it and set it.

Filters, even if unselected, tell you just how your search results are distributed across various aspects of an interaction. The number of interactions that match a particular filter item with respect to the current query are displayed in parenthesis beside each item. As you refine your search these numbers will change to reflect the other filters selected and/or your search terms.

An interaction can be 'multi-valued' with respect to a filter. For example an interaction can be supported by evidence from several source databases, so it contributes to the match count of each those databases.

- Source Database
  
  bind 62648
  
  bind_translation 60369
  
  biogrid 286327
  
  corum 2607
  
  dip 72248
  
  hprd 40515
  
  innatedb 5495
  
  intact 199895
  
  matrixdb 228
  
  mpact 13338
  
  mpidb 1206
  
  mppi 778
  
  ophid 47432
  
  seen by 1 DB 367196
  
  seen by 2 DBs 76415
  
  seen by 3 or more DBs 66265
- Organism **
  
  single organism interaction 470147
  
  cross organism interaction 39729
  
  Homo sapiens 222465
  
  Saccharomyces cerevisiae S288c 117322
  
  Drosophila melanogaster 45587
  
  Mus musculus 30263
  
  Arabidopsis thaliana 21469
  
  Escherichia coli K-12 15326
  
  Caenorhabditis elegans 14124
  
  Campylobacter jejuni subsp. jejuni NCTC 11168 11974
  
  Schizosaccharomyces pombe 972h- 8626
  
  Rattus norvegicus 8291
- Nature of Interaction
  
  unary 18539
  
  pairwise 470798
  
  multi-subunit 20539
  
  predicted 47435
  
  experimental 485444
  
  genetic 96
  
  physical 509825
- MI (MINT-Inspired) Score
  
  0 or more 386271
  
  0.1 or more 386264
  
  0.2 or more 325443
  
  0.3 or more 242794
  
  0.4 or more 214090
  
  0.5 or more 141267
  
  0.6 or more 113964
  
  0.7 or more 92054
  
  0.8 or more 71027
  
  0.9 or more 53001
  MI (MINT Inspired) scores are in the range [0,1], are limited to interactions where all its proteins are the same species, supported by valid PubMed IDs, not predicted or from OPHID, not a self-interaction, and are from one of the following organisms:
  - A. thaliana
  - B. taurus
  - C. elegans
  - D. melanogaster
  - H. sapiens
  - M. musculus
  - O. sativa
  - R. norvegicus
  - S. cerevisiae
  - S. pombe
  Any interaction that does not meet the above requirements has no score calculated and this is displayed as 'n/c'
  
  Go here to find out how the score is calculated.
- MI (MINT-Inspired) Organism Percentile
  
  0 or more 386271
  
  10 or more 372575
  
  20 or more 338243
  
  30 or more 328758
  
  40 or more 248642
  
  50 or more 210627
  
  60 or more 168845
  
  70 or more 131207
  
  80 or more 92714
  
  90 or more 39339
- Interaction Detection Method *
  
  3d-structure 2
  
  DNase I footprinting 537
  
  Identification by mass spectrometry 2
  
  Split renilla luciferase complementation 20841
  
  acetylase assay 1
  
  acetylation reaction 345
  
  adenylate cyclase complementation 5032
  
  adp ribosylase assay 3
  
  affinity chromatography technology 5
  
  affinity technology 4
  
  amplified luminescent proximity homogeneous assay 4
  
  anti bait coimmunoprecipitation 6