PhylomeDB is a public database for complete collections of gene phylogenies (phylomes). It allows users to interactively explore the evolutionary history of genes through the visualization of phylogenetic trees and multiple sequence alignments. Moreover, phylomeDB provides genome-wide orthology and paralogy predictions which are based on the analysis of the phylogenetic trees. The automated pipeline used to reconstruct trees aims at providing a high-quality phylogenetic analysis of different genomes , including Maximum Likelihood or Bayesian tree inference, alignment trimming and evolutionary model testing. PhylomeDB includes also a public download section with the complete set of trees, alignments and orthology predictions.
As of February 2012, all Genolevures gene entries with a sequence appearing in a PhylomeDB tree will have a link to the corresponding phylogenetic tree in PhylomeDB. In this way Genolevures users will be one-click away from a comprehensive phylogenetic...
Public Phylomes: 19
Trees: 482.274 (414.709 Max.Likelihood)
Alignments: 171.912
Proteins: 6.503.326
Species: 808
Genomes: 1.317
(Aug 12, 2011)