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Search Options
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View all,
Advanced Search,
Full-text Search (Textpresso), -->
Get Sequence,
BLAST,
C. albicans
GBrowse, C. glabrata GBrowse,
Pathways,
PatMatch,
Primers,
Full-text
Search (Textpresso),
Search CGD web pages,
Global Gene Hunter, -->
Search Literature,
and more.
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Help Resources
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View all.
Getting Started,
Sitemap, FAQ,
and more.
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Protein Info,Function Junction,Pathways,
Expression Connection, and more.
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GO Resources
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View all,
SGD GO Tutorial,
What is GO?,
GO Slim Mapper,
GO Term Finder,
and more.
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Community Resources
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Search CGD colleagues,
Find Candida labs,
Meetings & Courses,
Community News,
Nomenclature Guide,
Highlighted Topics,
Laboratory Strains and Lineage,
Job Opportunities.
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Submit Data
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View all,
Gene Registry,
Colleague update,
Contact CGD,
and more.
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Download Data
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View all,
Batch Download,
GO Annotations File (README),
Chromosomal
Feature File (README),
Sequence (README),
and more.
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FTP, Lab strains,Auxotrophic markers,Gene Names, Sequencing Tables,CGD Lite
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External Resources
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External Resources.
Virtual
Library. -->
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About CGD
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C.
albicans Genome Snapshot,
C.
glabrata Genome Snapshot,
Citing CGD,
CGD Staff,
Contact CGD.
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CGD Search Options
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| All the search
options listed below search for information within the Candida Genome Database
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| CGD Basic Searches
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| Note: All searches are case insensitive; wildcard
character (*) ok; only last names of colleagues are searched |
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| CGD Quick Search: |
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| Use a keyword to simultaneously
search by major categories of information in CGD (gene name,
locus description, GO
terms, GO IDs, phenotypes, colleagues, authors, PubMed IDs, biochemical pathway
names, orthologs and best hits in S. cerevisiae and other Candida species. Examples: 'ACT1', 'orf19.2203', 'orf6.1022', 'transcription', 'Smith'. The asterisk character (*) may be used as a wild card.
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| CGD Text
Search: |
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| Use a keyword to simultaneously
search all of the categories of information in CGD that are
included in the Quick Search, plus locus history notes,
paper abstracts, and gene name descriptions.
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| CGD Advanced Searches |
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Advanced
Search
Find a chromosomal feature (e.g., gene, ORF,
centromere) based on selected criteria (e.g., chromosome
number, GO-Slim terms, etc.) |
Full-text
Literature Search
Customizable keyword searching of the
full-text of over 16,500 Candida journal articles with
Textpresso,
a tool developed at Wormbase |
Batch Download
Simultaneous retrieval of multiple types of data for a list of gene or feature names
Expanded Phenotype Search
Search the text of all phenotype
information to find phenotypes of interest and view the genes
associated with them, or browse the entire list of
phenotype terms |
GO Slim Mapper
This tool determines to
which GO-slim terms a set of Candida genes is annotated |
GO Term Finder
This tool determines the signficant GO terms that a set of Candida genes shares in common
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Specialized
Pathway Searches
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Pathway Query Page
Search biochemical pathway information in
CGD, using the query functionality integral to the
Pathway Tools software.
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Specialized Gene
and Sequence Searches
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Gene/Sequence Resources (Get Sequence)
Retrieve, display, and analyze a gene or
sequence in many ways, such as protein translation and
restriction mapping.
BLAST
Compare any query sequence against various
Candida datasets
GBrowse Genome Browser
for C.
albicans SC5314 Assembly 21
for C.
albicans SC5314 Assembly 19
for C. glabrata CBS138
View and navigate genomic sequence
Chromosome History Search
View the complete sequence and annotation
history of each Assembly 21 chromosome
Summary of Genome Versions
View the complete history of sequence and
annotation changes for each genome
Pattern Matching
Locate DNA or protein sequence patterns
FASTA
Sequence comparison tool; typically slower
than BLAST, but can be more sensitive
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Design Primers
Design sequencing and PCR primers
Restriction Analysis
Display the restriction map for a sequence
Global
Gene Hunter * Searches other
databases in addition to CGD
Find everything about a Candida albicans gene from multiple databases
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| Search Orthologs
and Best Hits: |
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Search orthologs or best
hits to S. cerevisiae genes or genes in other Candida species by gene name. Case insensitive and wildcard character (*) searches
are allowed.
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| Search CGD Web Pages |
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| Search Candida Literature |
Search Literature in CGD
View CGD's annotated literature guide for any gene
Full-text literature Search (Textpresso)
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List of genome-wide analysis papers
Link to a list of genome-wide analysis
papers (e.g., microarray analysis publications) stored in
CGD
Table of Gene Summary Paragraphs
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PDB Homolog Query
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Candida Protein Motif Query
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Search Colleague Information
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Search CGD Colleagues
Search contact information submitted to
CGD by Candida researchers
Candida Laboratories
Links to PIs of laboratories that study Candida |
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