Search Options
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View all,
Advanced Search,
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Get Sequence,
BLAST,
C. albicans
GBrowse, C. glabrata GBrowse,
Pathways,
PatMatch,
Primers,
Full-text
Search (Textpresso),
Search CGD web pages,
Global Gene Hunter, -->
Search Literature,
and more.
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Help Resources
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View all.
Getting Started,
Sitemap, FAQ,
and more.
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Protein Info,Function Junction,Pathways, Expression Connection, and more.
GO Resources
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View all,
SGD GO Tutorial,
What is GO?,
GO Slim Mapper,
GO Term Finder,
and more.
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Community Resources
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Search CGD colleagues,
Find Candida labs,
Meetings & Courses,
Community News,
Nomenclature Guide,
Highlighted Topics,
Laboratory Strains and Lineage,
Job Opportunities.
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Submit Data
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Gene Registry,
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and more.
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Download Data
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View all,
Batch Download,
GO Annotations File (README),
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Feature File (README),
Sequence (README),
and more.
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FTP, Lab strains,Auxotrophic markers,Gene Names, Sequencing Tables,CGD Lite
External Resources
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External Resources.
Virtual
Library. -->
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About CGD
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C.
albicans Genome Snapshot,
C.
glabrata Genome Snapshot,
Citing CGD,
CGD Staff,
Contact CGD.
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Help Resources
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Site Map |
A brief description of CGD resources & tools, organized by topic. Links to help documentation. Compares and contrasts similar resources.
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Getting Started with CGD |
Common uses of CGD
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Gene Nomenclature Guide |
Information about the various types of gene names/identifiers that are in use. Guidelines for registering a new gene name, as agreed upon by the members of the research community.
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Sequence Documentation |
Information about the DNA and protein sequences in CGD. How to access sequence information. The source of these sequences and further explanation of some sequence-related issues.
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Search Help |
Documentation about search
tools in CGD. Additional tool-specific documentation is available: Advanced Search|Batch Download|Get Sequence|Full-text
Literature Search (Textpresso)
Global Gene Hunter -->
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GBrowse Help |
Navigating the genome using the GBrowse Genome Browser. How to view nucleotide and protein sequence in GBrowse.
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BLAST Documentation |
How to use the BLAST tool
to query sequence similarity in CGD. A detailed
description of the search output is found on the BLAST Results help
page.
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Non-standard
Genetic Code Usage in Candida |
Information about translation tables used
in CGD. Candida albicans and some related
species (often called the "CTG clade") use a non-standard
genetic code, "Translation table 12: Alternative Yeast Nuclear Code," to translate nuclear genes.
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Pattern Matching
Tool Documentation |
How to use the Patmatch tool
to locate DNA or protein sequence patterns in
CGD.
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Primer
Design Tool Documentation |
How to use the Webprimer tool
to design primers for PCR or for sequencing.
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Restriction Analysis |
How to use the Genome
Restriction Analysis tool to compute a restriction map based
on DNA sequence.
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Biochemical Pathways |
How to search and navigate
metabolic pathway information in CGD.
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Gene Ontology (GO) Documentation |
A guide to the Gene Ontology information and tools in CGD: What is GO? | SGD GO Tutorial | GO Slim Mapper Help | GO Term Finder Help
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CGD Web Page Help |
A guide to the types of information found on CGD web pages: Locus | Literature Guide | CGD Paper | Mutant Phenotype
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Protein Pages |
A guide to the resources available from the Protein tab on the Locus Summary page for each ORF: Protein Information Page | Domains/Motifs Page | Protein Physicochemical Properties | PDB Homolog Page
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CGD Download Help |
README documents describing some of files available for download from CGD (full list on the Download Index page): Gene Ontology (GO) Annotations File | Chromosomal Feature File | Sequence Files
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CGD Quick Resource Guide |
A pamphlet (download pdf) that
describes the content and usage of many resources available at
CGD. The guide was developed a few years ago and so it does not include the latest features added to
CGD, but it provides an overview of the basic
functions and types of information available.
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Glossary |
Terms and definitions, provided by Saccharomyces Genome Database
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FAQ (Frequently Asked Questions) |
Answers to some of the most common questions asked by CGD users
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What's New in CGD |
Changes and additions to CGD services
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Contact CGD |
Send suggestions or questions to CGD
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