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The IKMC MartSearch project integrates data from numerous BioMarts to facilitate both simple and expert searches. Use the search bar to the right to perform simple searches of our data. |
Enter gene/product identifiers (e.g. Cbx1 or EPD0027_2_A01) or any other search term described in the help section. |
Viewing IKMC Data in Ensembl
Most of the products/data found within this portal can also be viewed as DAS tracks in the Ensembl genome browser. Follow these links to have the tracks automatically activated for you:
- IKMC alleles in Ensembl Mouse
- IKMC alleles on orthologous genes in Ensembl Human
Federated Searches
The links below take you to the standard MartView interface for several examples of federated queries:
- Find all IKMC targeted ES cells for genes encoding transcription factors on Chromosome 1. (This query joins IKMC Projects/Alleles to Ensembl).
- Find all IKMC mice available from the EMMA Repository with information on the vector used to make the mutation. (This query joins IKMC Targeting Repository to Mouse Production data).
- Find all IKMC targeted ES cells for genes expressed in heart. (This query joins IKMC Projects/Alleles to EurExpress).
- Find all conditionally targeted IKMC ES cells that are suitable for micro-injection. (This query joins IKMC Targeting Repository to IKMC Projects/Alleles).
The BioMarts
This portal integrates information on IKMC mouse knockout resources with numerous other relevant datasets, including Ensembl, Europhenome, EurExpress and EMMA. For more information about this portal and the way in which it unites and searches the data, please see the about page. If you wish to access any of these BioMarts directly, click on the names of the datasets in the image below and you will be taken to the standard MartView interface.
Information for Developers
All the code and data that we produce is open-source and free to use. The following links will guide you to our source-code and documentation on how you can interact with the services we provide.
- All the code used to create this portal
- The ruby API used to interact with the BioMarts
- Using our search engine in your application