'Knitr' web sites
Knitr elegant, flexible and fast dynamic report generation with r. knitr
yihui.name 2015-05-09
knitr Elegant, flexible and fast dynamic report generation with R. knitr Home Objects Options Hooks Patterns Demos knitr Elegant, flexible and fast dynamic report generation with R Overview The knitr package was designed to be a transparent engine for dynamic report generation with R, solve some long.standing problems in Sweave, and combine features in other add.on packages into one package knitr asymp; Sweave cacheSweave
yihui.name 2015-05-09
knitr Elegant, flexible and fast dynamic report generation with R. knitr Home Objects Options Hooks Patterns Demos knitr Elegant, flexible and fast dynamic report generation with R Overview The knitr package was designed to be a transparent engine for dynamic report generation with R, solve some long.standing problems in Sweave, and combine features in other add.on packages into one package knitr asymp; Sweave cacheSweave
R and open science
inundata.org 2013-02-13 ⚑r&d
knitr where a user can track workflow provenance using hooks. Using XML to track metadata and maintain provenance traces across runs Ideas. xF670; GitHub Science Rapid peer.peer sharing of code is great for science R packages early in development can easily be tested, rapidly deployed from GitHub using devtools and revised before submitting to a persistent repository such as CRAN. library devtools install github RMendeley ,
inundata.org 2013-02-13 ⚑r&d
knitr where a user can track workflow provenance using hooks. Using XML to track metadata and maintain provenance traces across runs Ideas. xF670; GitHub Science Rapid peer.peer sharing of code is great for science R packages early in development can easily be tested, rapidly deployed from GitHub using devtools and revised before submitting to a persistent repository such as CRAN. library devtools install github RMendeley ,
Acquiring ecological evolutionary data in r
esa.ropensci.org 2013-03-12 ⚑r&d
knitr Markdown Xie Y 2012. knitr A general.purpose package for dynamic report generation in R. knitr Markdown GitHub GitHub automatically renders Markdown and even provides syntax highlighting knitr Markdown GitHub executible paper knitr Markdown GitHub pre publication review Incorporate citations with R Markdown knitcitations citet c Halpern2006 10.1111 j.1461.0248.2005.00827.x then cite in your markdown file citet Halpern2006 or
esa.ropensci.org 2013-03-12 ⚑r&d
knitr Markdown Xie Y 2012. knitr A general.purpose package for dynamic report generation in R. knitr Markdown GitHub GitHub automatically renders Markdown and even provides syntax highlighting knitr Markdown GitHub executible paper knitr Markdown GitHub pre publication review Incorporate citations with R Markdown knitcitations citet c Halpern2006 10.1111 j.1461.0248.2005.00827.x then cite in your markdown file citet Halpern2006 or
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Altmetrics via r from ropensci
knitr markdown reproducible reports Xie Y 2012. knitr A general.purpose package for dynamic report generation in R. Embed custom R scripts as API calls open CPU ropensci.org alm xF670; github.com ropensci xF620; twitter.com ropensci To navigate this presentation, type M to see all slides. G to go to a specific slide 8592; 8594; Go to
Welcome to my lab notebook. reloaded
www.carlboettiger.info 2013-03-12 ⚑r&d
knitr simplified all that. I can now write code, analysis, figures, equations, citations, etc, into a single Rmarkdown format and track it s evolution through git version control. The knitr markdown format goes smoothly on Github, the lab notebook, and even into generating pdf or word documents for publication, never seperating the code from the results. For details, see writing reproducibly in the open with knitr . Navigating the
www.carlboettiger.info 2013-03-12 ⚑r&d
knitr simplified all that. I can now write code, analysis, figures, equations, citations, etc, into a single Rmarkdown format and track it s evolution through git version control. The knitr markdown format goes smoothly on Github, the lab notebook, and even into generating pdf or word documents for publication, never seperating the code from the results. For details, see writing reproducibly in the open with knitr . Navigating the
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Lab notebook
knitr 22 Feb 2013 pageviews 117 I have on ocassion been exploring the use of semantic markup in the notebook. In this post I illustrate how I am handling semantic citations. One of the more intriguing ideas is the ability to add semantic meaning to citations through the CITO ontology of Shotton 2010. Citation counts form a central part of academic discourse, but contain very little information regarding the reason for the
ropensci.org
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