'Uniprotkb' web sites
Uniprotkb swiss.prot
www.ebi.ac.uk 2006-11-20 ⚑tech
uniprotkb Swiss.Prot Get Nucleotide sequences Protein sequences Protein structures Protein signatures Literature Protein seq SRS Arrayexpress for. Site search. uniprotkb Swiss.Prot DATABASE uniprotkb Swiss.Prot Home Information Access Submissions Tools FTP People Projects Publications Documents Contact uniprotkb Swiss.Prot The uniprotkb Swiss.Prot Protein Knowledgebase is an annotated protein sequence database established in 1986.
www.ebi.ac.uk 2006-11-20 ⚑tech
uniprotkb Swiss.Prot Get Nucleotide sequences Protein sequences Protein structures Protein signatures Literature Protein seq SRS Arrayexpress for. Site search. uniprotkb Swiss.Prot DATABASE uniprotkb Swiss.Prot Home Information Access Submissions Tools FTP People Projects Publications Documents Contact uniprotkb Swiss.Prot The uniprotkb Swiss.Prot Protein Knowledgebase is an annotated protein sequence database established in 1986.
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Current release statistics uniprot embl.ebi
uniprotkb TrEMBL PROTEIN DATABASE RELEASE 2014 10 STATISTICS 1. INTRODUCTION Release 2014 10 of 29.Oct.2014 of uniprotkb TrEMBL contains 86536393 sequence entries, comprising 27389160364 amino acids. 2646634 sequences have been added since release 2014 09, the sequence data of 11693 existing entries has been updated and the annotations of 33921871 entries have been revised. This represents an increase of 3. Number of fragments
Uniprotkb swiss.prot release 2014 10 statistics
web.expasy.org 2014-11-14
uniprotkb Swiss.Prot Release 2014 10 statistics Documents Home. Contact uniprotkb Swiss.Prot protein knowledgebase release 2014 10 statistics 1. INTRODUCTION Release 2014 10 of 29.Oct.14 of uniprotkb Swiss.Prot contains 546790 sequence entries, comprising 194613039 amino acids abstracted from 232403 references. 357 sequences have been added since release 2014 09, the sequence data of 12 existing entries has been updated and the
web.expasy.org 2014-11-14
uniprotkb Swiss.Prot Release 2014 10 statistics Documents Home. Contact uniprotkb Swiss.Prot protein knowledgebase release 2014 10 statistics 1. INTRODUCTION Release 2014 10 of 29.Oct.14 of uniprotkb Swiss.Prot contains 546790 sequence entries, comprising 194613039 amino acids abstracted from 232403 references. 357 sequences have been added since release 2014 09, the sequence data of 12 existing entries has been updated and the
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Http://hamap.expasy.org
uniprotkb via UniProt automatic annotation pipeline. We also provide an interface to scan user sequences against HAMAP family profiles More.. Forthcoming changes to the profile format Search Field Term Last updated29.Oct.2014 for UniProt release 2014 10 Number of family profiles 1 987 Number of annotation rules 2 003 All Rules Accession AC Trigger Profile TR Template Comments Taxonomic scope Annotations Entry name ID Protein name
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Expasy. prosite
uniprotkb Swiss.Prot or TrEMBL AC or ID Help exclude patterns with a high probability of occurrence ScanProsite. advanced scan PRATT. allows to interactively generate conserved patterns from a series of unaligned proteins. MyDomains. Image Creator. allows to generate custom domain figures. SIB Swiss Institute of Bioinformatics. Disclaimer Back to the
Viral protein annotation program
www.uniprot.org 2013-03-08 ⚑tech
uniprotkb Sequence Clusters UniRef Sequence Archive UniParc Literature citationsTaxonomyKeywordsSubcellular locationsCross.referenced databasesNewsDocumentsUser manualFAQHelpAnnotation programsQuery Advanced Search Show advanced search optionsReset button SearchBlastAlignRetrieveID Mapping Sequence or UniProt identifier BlastClear OptionsOptions Help For a sequence similarity search, enter bull; a protein or nucleotide sequence
www.uniprot.org 2013-03-08 ⚑tech
uniprotkb Sequence Clusters UniRef Sequence Archive UniParc Literature citationsTaxonomyKeywordsSubcellular locationsCross.referenced databasesNewsDocumentsUser manualFAQHelpAnnotation programsQuery Advanced Search Show advanced search optionsReset button SearchBlastAlignRetrieveID Mapping Sequence or UniProt identifier BlastClear OptionsOptions Help For a sequence similarity search, enter bull; a protein or nucleotide sequence
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Plant protein annotation program
uniprotkb Sequence Clusters UniRef Sequence Archive UniParc Literature citationsTaxonomyKeywordsSubcellular locationsCross.referenced databasesNewsDocumentsUser manualFAQHelpAnnotation programsQuery Advanced Search Show advanced search optionsReset button SearchBlastAlignRetrieveID Mapping Sequence or UniProt identifier BlastClear OptionsOptions Help For a sequence similarity search, enter bull; a protein or nucleotide sequence
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Uniprot release 15.2
uniprotkb Protein knowledgebaseProteomesProtein sets from fully sequenced genomesUniRefSequence clustersSupporting dataSelect one of the options below to target your search Literature citationsTaxonomyKeywordsSubcellular locationsCross.referenced databasesDiseasesAnnotation programsUniParcSequence archiveHelpHelp pages, FAQs, uniprotkb manual, documents, news archive, etc.xAdvancedx Searching in BLASTAlignUpload listsContactHelpYou
Site map saccharomyces genome database
www.yeastgenome.org 2012-02-20 ⚑blog
uniprotkb EBI InterPro EBI HomoloGene NCBI YGOB Trinity College Function GO GO Term Finder GO Slim Mapper GO Slim Mapping File Expression Biochemical Pathways Phenotypes Search for phenotypes Browse all phenotypes Interactions YeastGFP Resources GO Consortium BioGRID U. Toronto Literature Full.text Search Textpresso New Yeast Papers Genome.wide Analysis Papers Resources PubMed NCBI PubMed Central NCBI Google Scholar Community
www.yeastgenome.org 2012-02-20 ⚑blog
uniprotkb EBI InterPro EBI HomoloGene NCBI YGOB Trinity College Function GO GO Term Finder GO Slim Mapper GO Slim Mapping File Expression Biochemical Pathways Phenotypes Search for phenotypes Browse all phenotypes Interactions YeastGFP Resources GO Consortium BioGRID U. Toronto Literature Full.text Search Textpresso New Yeast Papers Genome.wide Analysis Papers Resources PubMed NCBI PubMed Central NCBI Google Scholar Community
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Download data saccharomyces genome database
uniprotkb EBI InterPro EBI HomoloGene NCBI YGOB Trinity College Function GO GO Term Finder GO Slim Mapper GO Slim Mapping File Expression Biochemical Pathways Phenotypes Search for phenotypes Browse all phenotypes Interactions YeastGFP Resources GO Consortium BioGRID U. Toronto Literature Full.text Search Textpresso New Yeast Papers Genome.wide Analysis Papers Resources PubMed NCBI PubMed Central NCBI Google Scholar Community
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About saccharomyces genome database
uniprotkb EBI InterPro EBI HomoloGene NCBI YGOB Trinity College Function GO GO Term Finder GO Slim Mapper GO Slim Mapping File Expression Biochemical Pathways Phenotypes Search for phenotypes Browse all phenotypes Interactions YeastGFP Resources GO Consortium BioGRID U. Toronto Literature Full.text Search Textpresso New Yeast Papers Genome.wide Analysis Papers Resources PubMed NCBI PubMed Central NCBI Google Scholar Community
Swi4 yer111c interaction summary. biogrid
thebiogrid.org 2013-03-08
uniprotkb . PhosphoGRID Download 418 Associations For This Protein 36856 559292 Stats Options Switch View Summary Sortable Table 8 PTM Sites Copyright 2013 TyersLab.com, All Rights Reserved. Terms and Conditions. Privacy Policy. Osprey Network Visualization System. TyersLab.com.
thebiogrid.org 2013-03-08
uniprotkb . PhosphoGRID Download 418 Associations For This Protein 36856 559292 Stats Options Switch View Summary Sortable Table 8 PTM Sites Copyright 2013 TyersLab.com, All Rights Reserved. Terms and Conditions. Privacy Policy. Osprey Network Visualization System. TyersLab.com.
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Cdc28 ybr160w interaction summary. biogrid
uniprotkb . PhosphoGRID Download 546 Associations For This Protein 32859 559292 Stats Options Switch View Summary Sortable Table 6 PTM Sites Copyright 2013 TyersLab.com, All Rights Reserved. Terms and Conditions. Privacy Policy. Osprey Network Visualization System. TyersLab.com.
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Cla4 ynl298w interaction summary. biogrid
uniprotkb . PhosphoGRID Download 592 Associations For This Protein 35540 559292 Stats Options Switch View Summary Sortable Table 14 PTM Sites Copyright 2013 TyersLab.com, All Rights Reserved. Terms and Conditions. Privacy Policy. Osprey Network Visualization System. TyersLab.com.
Rcsb pdb validation deposition portal
deposit.rcsb.org 2011-05-31
uniprotkb 1 or BLAST 2 or about your ligand using Ligand Expo 3. Instructions will be provided during deposition to deposit new ligands. Collect log files from data processing, scaling, MR, refinement, etc. pdb extract can parse these files for you and gather sequence information for what was in the sample. Convert and Check crystallographic structure factors with SF.Tool. The deposited structure factor file should be the one that
deposit.rcsb.org 2011-05-31
uniprotkb 1 or BLAST 2 or about your ligand using Ligand Expo 3. Instructions will be provided during deposition to deposit new ligands. Collect log files from data processing, scaling, MR, refinement, etc. pdb extract can parse these files for you and gather sequence information for what was in the sample. Convert and Check crystallographic structure factors with SF.Tool. The deposited structure factor file should be the one that
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Http://www.rcsb.org/pdb/explore/explore.do?structureid=2la3
uniprotkb Protein Feature View. Search PDB. Q97SR5 Source Hide Polymer 1 Scientific Name Streptococcus pneumoniae Taxonomy Expression System Escherichia coli External Domain Annotations Hide Pfam
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Http://www.rcsb.org/pdb/explore/explore.do?structureid=2la6
uniprotkb Protein Feature View. Search PDB. P35637 Source Hide Polymer 1 Scientific Name Homo sapiens Taxonomy Common Name Human Expression System Escherichia coli External Domain Annotations
Ensembl genome browser 77 macaca mulatta. protein summary. transcript fgfrl1 [..]
www.ensembl.org 2014-11-09
uniprotkb TrEMBL F7GP92LocationChromosome 1 2,936,819.2,940,241 reverse strand.GeneThis transcript is a product of gene ENSMMUG00000032300This gene has 1 transcript splice variant Show transcript tableHide transcript table NameTranscript IDbpProteinBiotypeUniProtFlags FGFRL1.201ENSMMUT000000476921464478 aa Protein codingGenes and or transcript that contains an open reading frame ORF. F7GP92 FGFRL1.201. Protein summary. Protein
www.ensembl.org 2014-11-09
uniprotkb TrEMBL F7GP92LocationChromosome 1 2,936,819.2,940,241 reverse strand.GeneThis transcript is a product of gene ENSMMUG00000032300This gene has 1 transcript splice variant Show transcript tableHide transcript table NameTranscript IDbpProteinBiotypeUniProtFlags FGFRL1.201ENSMMUT000000476921464478 aa Protein codingGenes and or transcript that contains an open reading frame ORF. F7GP92 FGFRL1.201. Protein summary. Protein
Rcsb pdb validation deposition portal
deposit.pdb.org 2016-01-09
uniprotkb 1 or BLAST 2 or about your ligand using Ligand Expo 3. Instructions will be provided during deposition to deposit new ligands. Collect log files from data processing, scaling, MR, refinement, etc. pdb extract can parse these files for you and gather sequence information for what was in the sample. Convert and Check crystallographic structure factors with SF.Tool. The deposited structure factor file should be the one that
deposit.pdb.org 2016-01-09
uniprotkb 1 or BLAST 2 or about your ligand using Ligand Expo 3. Instructions will be provided during deposition to deposit new ligands. Collect log files from data processing, scaling, MR, refinement, etc. pdb extract can parse these files for you and gather sequence information for what was in the sample. Convert and Check crystallographic structure factors with SF.Tool. The deposited structure factor file should be the one that
Vega genome browser 57 homo sapiens. summary. transcript fgfrl1.002 otthumt00000359140 [..]
vega.sanger.ac.uk 2014-11-09
uniprotkb , NCBI RefSeq. Annotation is by the VEGA Havana project.FGFRL1.002OTTHUMT00000359140335 bp No protein product Processed transcriptTranscripts that don t contain an open reading frame ORF and cannot be placed in one of the other categories.. Summary. Statistics Exons 2 Transcript length 335 bpsClassPutative processed transcript Definition AuthorThis transcript was annotated by HavanaVersion dateVersion 1, last modified on
vega.sanger.ac.uk 2014-11-09
uniprotkb , NCBI RefSeq. Annotation is by the VEGA Havana project.FGFRL1.002OTTHUMT00000359140335 bp No protein product Processed transcriptTranscripts that don t contain an open reading frame ORF and cannot be placed in one of the other categories.. Summary. Statistics Exons 2 Transcript length 335 bpsClassPutative processed transcript Definition AuthorThis transcript was annotated by HavanaVersion dateVersion 1, last modified on
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Http://pfam.sanger.ac.uk/help?tab=helpreferencesblock
uniprotkb at a given time.point. Each Pfam.A family consists of a curated seed alignment containing a small set of representative members of the family, profile hidden Markov models profile HMMs built from the seed alignment, and an automatically generated full alignment, which contains all detectable protein sequences belonging to the family, as defined by profile HMM searches of primary sequence databases. Pfam.B families are
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Http://pfam.sanger.ac.uk/help
uniprotkb at a given time.point. Each Pfam.A family consists of a curated seed alignment containing a small set of representative members of the family, profile hidden Markov models profile HMMs built from the seed alignment, and an automatically generated full alignment, which contains all detectable protein sequences belonging to the family, as defined by profile HMM searches of primary sequence databases. Pfam.B families are
Phyre2 protein fold recognition server
www.sbg.bio.ic.ac.uk 2015-05-14
uniprotkb .AC uniprotkb .IDGeneID EntrezGene RefSeq GI numberPDBGO numberIPI UniRef100UniParcPIRNCBI.taxon MIMUniGenePubMedEMBL EMBL.CDSEnsemblEnsembl TRSEnsembl PRO A search is also performed on the sequence descriptor line. Please note the list of available identifiers is not exhaustive as there are so many naming conventions in use. However, hopefully you ll find what you re looking for. e.g. BRCA1, tafazzin homo sapiens, A0EM47
www.sbg.bio.ic.ac.uk 2015-05-14
uniprotkb .AC uniprotkb .IDGeneID EntrezGene RefSeq GI numberPDBGO numberIPI UniRef100UniParcPIRNCBI.taxon MIMUniGenePubMedEMBL EMBL.CDSEnsemblEnsembl TRSEnsembl PRO A search is also performed on the sequence descriptor line. Please note the list of available identifiers is not exhaustive as there are so many naming conventions in use. However, hopefully you ll find what you re looking for. e.g. BRCA1, tafazzin homo sapiens, A0EM47
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Uniprot release 15.2
uniprotkb Protein knowledgebaseProteomesProtein sets from fully sequenced genomesUniRefSequence clustersSupporting dataSelect one of the options below to target your search Literature citationsTaxonomyKeywordsSubcellular locationsCross.referenced databasesDiseasesAnnotation programsUniParcSequence archiveHelpHelp pages, FAQs, uniprotkb manual, documents, news archive, etc.xAdvancedx Searching in BLASTAlignUpload listsContactHelpYou
Site map saccharomyces genome database
www.yeastgenome.org 2012-02-20 ⚑blog
uniprotkb EBI InterPro EBI HomoloGene NCBI YGOB Trinity College Function GO GO Term Finder GO Slim Mapper GO Slim Mapping File Expression Biochemical Pathways Phenotypes Search for phenotypes Browse all phenotypes Interactions YeastGFP Resources GO Consortium BioGRID U. Toronto Literature Full.text Search Textpresso New Yeast Papers Genome.wide Analysis Papers Resources PubMed NCBI PubMed Central NCBI Google Scholar Community
www.yeastgenome.org 2012-02-20 ⚑blog
uniprotkb EBI InterPro EBI HomoloGene NCBI YGOB Trinity College Function GO GO Term Finder GO Slim Mapper GO Slim Mapping File Expression Biochemical Pathways Phenotypes Search for phenotypes Browse all phenotypes Interactions YeastGFP Resources GO Consortium BioGRID U. Toronto Literature Full.text Search Textpresso New Yeast Papers Genome.wide Analysis Papers Resources PubMed NCBI PubMed Central NCBI Google Scholar Community
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Download data saccharomyces genome database
uniprotkb EBI InterPro EBI HomoloGene NCBI YGOB Trinity College Function GO GO Term Finder GO Slim Mapper GO Slim Mapping File Expression Biochemical Pathways Phenotypes Search for phenotypes Browse all phenotypes Interactions YeastGFP Resources GO Consortium BioGRID U. Toronto Literature Full.text Search Textpresso New Yeast Papers Genome.wide Analysis Papers Resources PubMed NCBI PubMed Central NCBI Google Scholar Community
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About saccharomyces genome database
uniprotkb EBI InterPro EBI HomoloGene NCBI YGOB Trinity College Function GO GO Term Finder GO Slim Mapper GO Slim Mapping File Expression Biochemical Pathways Phenotypes Search for phenotypes Browse all phenotypes Interactions YeastGFP Resources GO Consortium BioGRID U. Toronto Literature Full.text Search Textpresso New Yeast Papers Genome.wide Analysis Papers Resources PubMed NCBI PubMed Central NCBI Google Scholar Community
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