'Uniprot' web sites
Http://www.uniprot.org/
www.uniprot.org 2011-08-27 ⚑news
uniprot Skip HeaderDownloads Contact Documentation HelpSearchBlastAlignRetrieveID MappingSearch inProtein Knowledgebase uniprot KB Sequence Clusters UniRef Sequence Archive UniParc Literature citationsTaxonomyKeywordsSubcellular locationsNewsDocumentsUser manualFAQHelpAnnotation programsQuery Advanced Search Show advanced search optionsReset button SearchBlastAlignRetrieveID Mapping Sequence or uniprot identifier BlastClear
www.uniprot.org 2011-08-27 ⚑news
uniprot Skip HeaderDownloads Contact Documentation HelpSearchBlastAlignRetrieveID MappingSearch inProtein Knowledgebase uniprot KB Sequence Clusters UniRef Sequence Archive UniParc Literature citationsTaxonomyKeywordsSubcellular locationsNewsDocumentsUser manualFAQHelpAnnotation programsQuery Advanced Search Show advanced search optionsReset button SearchBlastAlignRetrieveID Mapping Sequence or uniprot identifier BlastClear
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Http://www.uniprot.org
uniprot Skip HeaderDownloads Contact Documentation HelpSearchBlastAlignRetrieveID MappingSearch inProtein Knowledgebase uniprot KB Sequence Clusters UniRef Sequence Archive UniParc Literature citationsTaxonomyKeywordsSubcellular locationsCross.referenced databasesNewsDocumentsUser manualFAQHelpAnnotation programsQuery Advanced Search Show advanced search optionsReset button SearchBlastAlignRetrieveID Mapping Sequence or uniprot
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Uniprot release 9.4
uniprot release 9.4 p An evidence describes the source of an annotation, e.g. an experiment that has been published in the scientific literature, an orthologous protein, a record from another database, etc. p p a href manual evidences More a p Skip Header Helpx uniprot KBProtein knowledgebaseProteomesProtein sets from fully sequenced genomesUniRefSequence clustersSupporting dataSelect one of the options below to target your search
Current release statistics uniprot embl.ebi
www.ebi.ac.uk 2014-11-14 ⚑tech
uniprot EMBL.EBI Skip to main content Skip to local navigation Skip to EBI global navigation menu Skip to expanded EBI global navigation menu includes all sub.sections Services Research Training Industry About us Overview uniprot Current Release Statistics Current Release Statistics uniprot KB TrEMBL PROTEIN DATABASE RELEASE 2014 10 STATISTICS 1. INTRODUCTION Release 2014 10 of 29.Oct.2014 of uniprot KB TrEMBL contains 86536393
www.ebi.ac.uk 2014-11-14 ⚑tech
uniprot EMBL.EBI Skip to main content Skip to local navigation Skip to EBI global navigation menu Skip to expanded EBI global navigation menu includes all sub.sections Services Research Training Industry About us Overview uniprot Current Release Statistics Current Release Statistics uniprot KB TrEMBL PROTEIN DATABASE RELEASE 2014 10 STATISTICS 1. INTRODUCTION Release 2014 10 of 29.Oct.2014 of uniprot KB TrEMBL contains 86536393
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Uniprotkb swiss.prot
uniprot KB Swiss.Prot Get Nucleotide sequences Protein sequences Protein structures Protein signatures Literature Protein seq SRS Arrayexpress for. Site search. uniprot KB Swiss.Prot DATABASE uniprot KB Swiss.Prot Home Information Access Submissions Tools FTP People Projects Publications Documents Contact uniprot KB Swiss.Prot The uniprot KB Swiss.Prot Protein Knowledgebase is an annotated protein sequence database established in 1986.
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Http://www.ebi.ac.uk/intact/
uniprot Taxonomy ontology Allows users to browse the uniprot Taxonomy hierarchy as a tree and select terms in order to narrow down their dataset. Once a term is selected, you are taken back to the interaction tab to review your dataset. Limiting the scope of the current dataset with the GO ontology Allows users to browse the GO hierarchy as a tree and select terms in order to narrow down their dataset. Once a term is selected, you
Home. the international molecular exchange consortium
imex.sf.net 2013-03-08 ⚑tech
uniprot KB Accs Gene names Publication Ids IMEx data A non.redundant set of protein.protein interaction data from a broad taxonomic range of organisms Expertly curated from direct submissions or peer.reviewed journals to a consistent high standard. Available in standard formats MITAB or PSI.MI XML 2.5 Provided by a network of participating major public domain databases. Citing IMEx Orchard, S., et al. Protein interaction data
imex.sf.net 2013-03-08 ⚑tech
uniprot KB Accs Gene names Publication Ids IMEx data A non.redundant set of protein.protein interaction data from a broad taxonomic range of organisms Expertly curated from direct submissions or peer.reviewed journals to a consistent high standard. Available in standard formats MITAB or PSI.MI XML 2.5 Provided by a network of participating major public domain databases. Citing IMEx Orchard, S., et al. Protein interaction data
Mpidb about
jcvi.org 2014-11-14 ⚑tech
uniprot accessions and BIND methods to PSI MI controlled vocabulary. The BIND dataset remains stable and is not updated as BIND is discontinued. We use the latest stable primary uniprot accessions to uniquely identify proteins and their protein sequences. All imported accessions are checked if an update has to be performed. In case there is a one to one mapping for the new accession, we update the old one. Otherwise, we skip the
jcvi.org 2014-11-14 ⚑tech
uniprot accessions and BIND methods to PSI MI controlled vocabulary. The BIND dataset remains stable and is not updated as BIND is discontinued. We use the latest stable primary uniprot accessions to uniquely identify proteins and their protein sequences. All imported accessions are checked if an update has to be performed. In case there is a one to one mapping for the new accession, we update the old one. Otherwise, we skip the
Download reactome
reactome.org 2012-03-19 ⚑tech
uniprot to pathways plus stable id mappings uniprot to pathways mappings Curated and inferred uniprot to pathways mappings Gene association file GO annotation in Reactome Human reactions in SBML level 2, version 3 format. Events in the BioPAX level 2 format Events in the BioPAX level 3 format Reactome Pathways Gene Set Prot g 2.0 ontology for Reactome data model pins file, pont file, pprj file Human pathway diagrams PDF, or PNG
reactome.org 2012-03-19 ⚑tech
uniprot to pathways plus stable id mappings uniprot to pathways mappings Curated and inferred uniprot to pathways mappings Gene association file GO annotation in Reactome Human reactions in SBML level 2, version 3 format. Events in the BioPAX level 2 format Events in the BioPAX level 3 format Reactome Pathways Gene Set Prot g 2.0 ontology for Reactome data model pins file, pont file, pprj file Human pathway diagrams PDF, or PNG
Bioinformatics research group at sri international
brg.ai.sri.com 2013-03-16
uniprot , BioCyc, NCBI Taxonomy, Genbank, CMR, ENZYME, Gene Ontology, and KEGG databases. Lisp tools for bioinformatics The BioDB.Loader toolkit loads several bioinformatics databases into Lisp for facile processing. Privacy
brg.ai.sri.com 2013-03-16
uniprot , BioCyc, NCBI Taxonomy, Genbank, CMR, ENZYME, Gene Ontology, and KEGG databases. Lisp tools for bioinformatics The BioDB.Loader toolkit loads several bioinformatics databases into Lisp for facile processing. Privacy
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Ecolihouse overview
uniprot Complete Proteome for E. coli K1210 16 2013 The EcoliHouse server runs the MySQL relational database management system v. 5.1.41 , and is based on version 4.6 of BioWarehouse. The server has 33 GB of RAM and eight Intel Xeon 2.66 GHz processor cores. In order to use EcoliHouse, you must register to obtain an EcoliHouse login. A graphical user interface for EcoliHouse is provided by using phpMyAdmin. Usage Guidelines User
Rcsb pdb validation deposition portal
deposit.rcsb.org 2011-05-31
uniprot KB 1 or BLAST 2 or about your ligand using Ligand Expo 3. Instructions will be provided during deposition to deposit new ligands. Collect log files from data processing, scaling, MR, refinement, etc. pdb extract can parse these files for you and gather sequence information for what was in the sample. Convert and Check crystallographic structure factors with SF.Tool. The deposited structure factor file should be the one that
deposit.rcsb.org 2011-05-31
uniprot KB 1 or BLAST 2 or about your ligand using Ligand Expo 3. Instructions will be provided during deposition to deposit new ligands. Collect log files from data processing, scaling, MR, refinement, etc. pdb extract can parse these files for you and gather sequence information for what was in the sample. Convert and Check crystallographic structure factors with SF.Tool. The deposited structure factor file should be the one that
Http://pfam.janelia.org/help
pfam.janelia.org 2013-03-16 ⚑tech
uniprot KB at a given time.point. Each Pfam.A family consists of a curated seed alignment containing a small set of representative members of the family, profile hidden Markov models profile HMMs built from the seed alignment, and an automatically generated full alignment, which contains all detectable protein sequences belonging to the family, as defined by profile HMM searches of primary sequence databases. Pfam.B families are
pfam.janelia.org 2013-03-16 ⚑tech
uniprot KB at a given time.point. Each Pfam.A family consists of a curated seed alignment containing a small set of representative members of the family, profile hidden Markov models profile HMMs built from the seed alignment, and an automatically generated full alignment, which contains all detectable protein sequences belonging to the family, as defined by profile HMM searches of primary sequence databases. Pfam.B families are
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Http://pfam.janelia.org/help?tab=helpgetstartedblock
uniprot KB at a given time.point. Each Pfam.A family consists of a curated seed alignment containing a small set of representative members of the family, profile hidden Markov models profile HMMs built from the seed alignment, and an automatically generated full alignment, which contains all detectable protein sequences belonging to the family, as defined by profile HMM searches of primary sequence databases. Pfam.B families are
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Http://pfam.janelia.org/about
uniprot release 2011 06. Pfam is freely available under the Creative Commons Zero CC0 licence. Pfam is powered by the HMMER3 package written by Sean Eddy at the Howard Hughes Janelia Farm Research Campus. Pfam mirror sites are maintained at three main locations in the UK, at the Wellcome Trust Sanger Institute, by John Tate in the US, at Howard Hughes Janelia Farm Research Campus, by Rob Finn, Jody Clements and Goran Ceric in
Http://pfam.sanger.ac.uk/about
pfam.sanger.ac.uk 2015-05-14
uniprot release 2012 06. Pfam is freely available under the Creative Commons Zero CC0 licence. We comply with the data sharing guidelines of the Wellcome Trust Sanger Institute. Pfam is powered by the HMMER3 package written by Sean Eddy and his group at the Howard Hughes Janelia Farm Research Campus, and built by the Xfam consortium. Comments or questions on the site. Send a mail to pfam.help ebi.ac.uk. European Molecular Biology
pfam.sanger.ac.uk 2015-05-14
uniprot release 2012 06. Pfam is freely available under the Creative Commons Zero CC0 licence. We comply with the data sharing guidelines of the Wellcome Trust Sanger Institute. Pfam is powered by the HMMER3 package written by Sean Eddy and his group at the Howard Hughes Janelia Farm Research Campus, and built by the Xfam consortium. Comments or questions on the site. Send a mail to pfam.help ebi.ac.uk. European Molecular Biology
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Http://pfam.sanger.ac.uk/help?tab=helpreferencesblock
uniprot KB at a given time.point. Each Pfam.A family consists of a curated seed alignment containing a small set of representative members of the family, profile hidden Markov models profile HMMs built from the seed alignment, and an automatically generated full alignment, which contains all detectable protein sequences belonging to the family, as defined by profile HMM searches of primary sequence databases. Pfam.B families are
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Http://pfam.sanger.ac.uk/help
uniprot KB at a given time.point. Each Pfam.A family consists of a curated seed alignment containing a small set of representative members of the family, profile hidden Markov models profile HMMs built from the seed alignment, and an automatically generated full alignment, which contains all detectable protein sequences belonging to the family, as defined by profile HMM searches of primary sequence databases. Pfam.B families are
Http://www.uniprot.org/
www.uniprot.org 2011-08-27 ⚑news
uniprot Skip HeaderDownloads Contact Documentation HelpSearchBlastAlignRetrieveID MappingSearch inProtein Knowledgebase uniprot KB Sequence Clusters UniRef Sequence Archive UniParc Literature citationsTaxonomyKeywordsSubcellular locationsNewsDocumentsUser manualFAQHelpAnnotation programsQuery Advanced Search Show advanced search optionsReset button SearchBlastAlignRetrieveID Mapping Sequence or uniprot identifier BlastClear
www.uniprot.org 2011-08-27 ⚑news
uniprot Skip HeaderDownloads Contact Documentation HelpSearchBlastAlignRetrieveID MappingSearch inProtein Knowledgebase uniprot KB Sequence Clusters UniRef Sequence Archive UniParc Literature citationsTaxonomyKeywordsSubcellular locationsNewsDocumentsUser manualFAQHelpAnnotation programsQuery Advanced Search Show advanced search optionsReset button SearchBlastAlignRetrieveID Mapping Sequence or uniprot identifier BlastClear
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Http://www.uniprot.org
uniprot Skip HeaderDownloads Contact Documentation HelpSearchBlastAlignRetrieveID MappingSearch inProtein Knowledgebase uniprot KB Sequence Clusters UniRef Sequence Archive UniParc Literature citationsTaxonomyKeywordsSubcellular locationsCross.referenced databasesNewsDocumentsUser manualFAQHelpAnnotation programsQuery Advanced Search Show advanced search optionsReset button SearchBlastAlignRetrieveID Mapping Sequence or uniprot
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Uniprot release 9.4
uniprot release 9.4 p An evidence describes the source of an annotation, e.g. an experiment that has been published in the scientific literature, an orthologous protein, a record from another database, etc. p p a href manual evidences More a p Skip Header Helpx uniprot KBProtein knowledgebaseProteomesProtein sets from fully sequenced genomesUniRefSequence clustersSupporting dataSelect one of the options below to target your search
deposit.rcsb
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